Package: microseq 2.1.6

microseq: Basic Biological Sequence Handling

Basic functions for microbial sequence data analysis. The idea is to use generic R data structures as much as possible, making R data wrangling possible also for sequence data.

Authors:Lars Snipen, Kristian Hovde Liland

microseq_2.1.6.tar.gz
microseq_2.1.6.zip(r-4.5)microseq_2.1.6.zip(r-4.4)microseq_2.1.6.zip(r-4.3)
microseq_2.1.6.tgz(r-4.5-x86_64)microseq_2.1.6.tgz(r-4.5-arm64)microseq_2.1.6.tgz(r-4.4-x86_64)microseq_2.1.6.tgz(r-4.4-arm64)microseq_2.1.6.tgz(r-4.3-x86_64)microseq_2.1.6.tgz(r-4.3-arm64)
microseq_2.1.6.tar.gz(r-4.5-noble)microseq_2.1.6.tar.gz(r-4.4-noble)
microseq_2.1.6.tgz(r-4.4-emscripten)microseq_2.1.6.tgz(r-4.3-emscripten)
microseq.pdf |microseq.html✨
microseq/json (API)

# Install 'microseq' in R:
install.packages('microseq', repos = c('https://larssnip.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/larssnip/microseq/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

cpp

5.46 score 3 stars 3 packages 54 scripts 584 downloads 23 exports 20 dependencies

Last updated 9 months agofrom:1bf4da28cd. Checks:4 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 29 2025
R-4.5-win-x86_64NOTEJan 29 2025
R-4.5-mac-x86_64NOTEJan 29 2025
R-4.5-mac-aarch64NOTEJan 29 2025
R-4.5-linux-x86_64NOTEJan 29 2025
R-4.4-win-x86_64NOTEJan 29 2025
R-4.4-mac-x86_64NOTEJan 29 2025
R-4.4-mac-aarch64NOTEJan 29 2025
R-4.3-win-x86_64OKJan 29 2025
R-4.3-mac-x86_64OKJan 29 2025
R-4.3-mac-aarch64OKJan 29 2025

Exports:backTranslatefindGenesfindOrfsfindrRNAgff2fastagregexpriupac2regexlorfsmsa2matmsalignmsaTrimmuscleorfLengthorfSignaturereadFastareadFastqreadGFFregex2iupacreverseComplementtranslatewriteFastawriteFastqwriteGFF

Dependencies:clidata.tabledplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6Rcpprlangstringistringrtibbletidyselectutf8vctrswithr

The microseq package vignette

Rendered fromvignette.Rnwusingutils::Sweaveon Jan 29 2025.

Last update: 2022-07-05
Started: 2017-08-04