Package: microseq 2.2.0

microseq: Basic Biological Sequence Handling

Basic functions for microbial sequence data analysis. The idea is to use generic R data structures as much as possible, making R data wrangling possible also for sequence data.

Authors:Lars Snipen [aut, cre], Kristian Hovde Liland [aut]

microseq_2.2.0.tar.gz
microseq_2.2.0.zip(r-4.7)microseq_2.2.0.zip(r-4.6)microseq_2.2.0.zip(r-4.5)
microseq_2.2.0.tgz(r-4.6-x86_64)microseq_2.2.0.tgz(r-4.6-arm64)microseq_2.2.0.tgz(r-4.5-x86_64)microseq_2.2.0.tgz(r-4.5-arm64)
microseq_2.2.0.tar.gz(r-4.7-arm64)microseq_2.2.0.tar.gz(r-4.7-x86_64)microseq_2.2.0.tar.gz(r-4.6-arm64)microseq_2.2.0.tar.gz(r-4.6-x86_64)
microseq_2.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
microseq/json (API)

# Install 'microseq' in R:
install.packages('microseq', repos = c('https://larssnip.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/larssnip/microseq/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

5.58 score 4 stars 3 packages 132 scripts 691 downloads 24 exports 19 dependencies

Last updated from:06f12242fc. Checks:11 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
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linux-devel-x86_64WARNING166
source / vignettesOK258
linux-release-arm64WARNING162
linux-release-x86_64WARNING164
macos-release-arm64WARNING122
macos-release-x86_64WARNING342
macos-oldrel-arm64WARNING110
macos-oldrel-x86_64WARNING354
windows-develWARNING128
windows-releaseWARNING140
windows-oldrelWARNING114
wasm-releaseOK135

Exports:backTranslatectranslatefindGenesfindOrfsfindrRNAgff2fastagregexpriupac2regexlorfsmsa2matmsalignmsaTrimmuscleorfLengthorfSignaturereadFastareadFastqreadGFFregex2iupacreverseComplementtranslatewriteFastawriteFastqwriteGFF

Dependencies:clidata.tabledplyrgenericsgluelifecyclemagrittrpillarpkgconfigR6Rcpprlangstringistringrtibbletidyselectutf8vctrswithr