Package: micropan 2.2.1
micropan: Microbial Pan-Genome Analysis
A collection of functions for computations and visualizations of microbial pan-genomes.
Authors:
micropan_2.2.1.tar.gz
micropan_2.2.1.zip(r-4.7)micropan_2.2.1.zip(r-4.6)micropan_2.2.1.zip(r-4.5)
micropan_2.2.1.tgz(r-4.6-any)micropan_2.2.1.tgz(r-4.5-any)
micropan_2.2.1.tar.gz(r-4.7-any)micropan_2.2.1.tar.gz(r-4.6-any)
micropan_2.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
micropan/json (API)
| # Install 'micropan' in R: |
| install.packages('micropan', repos = c('https://larssnip.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/larssnip/micropan/issues
Datasets:
- xmpl.bclst - Data sets for use in examples
- xmpl.bdist - Data sets for use in examples
- xmpl.panmat - Data sets for use in examples
Last updated from:4bd8f5028a. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 167 | ||
| source / vignettes | OK | 248 | ||
| linux-release-x86_64 | NOTE | 160 | ||
| macos-release-arm64 | NOTE | 94 | ||
| macos-oldrel-arm64 | NOTE | 135 | ||
| windows-devel | NOTE | 149 | ||
| windows-release | NOTE | 99 | ||
| windows-oldrel | NOTE | 96 | ||
| wasm-release | OK | 99 |
Exports:bClustbDistbinomixEstimateblastpAllAllchaodClustdistJaccarddistManhattanentrezDownloadextractPanGenesfluiditygeneFamilies2fastageneWeightsgetAccessionsheapshmmerCleanOverlaphmmerScanisOrthologpanMatrixpanPcapanPreprarefactionreadBlastPairreadBlastSelfreadHmmerxzcompressxzuncompress
Dependencies:clicpp11data.tabledplyrgenericsglueigraphlatticelifecyclemagrittrMatrixmicroseqpillarpkgconfigR6Rcpprlangstringistringrtibbletidyselectutf8vctrswithr
