Package: micropan 2.2.1

micropan: Microbial Pan-Genome Analysis

A collection of functions for computations and visualizations of microbial pan-genomes.

Authors:Lars Snipen and Kristian Hovde Liland

micropan_2.2.1.tar.gz
micropan_2.2.1.zip(r-4.5)micropan_2.2.1.zip(r-4.4)micropan_2.2.1.zip(r-4.3)
micropan_2.2.1.tgz(r-4.5-any)micropan_2.2.1.tgz(r-4.4-any)micropan_2.2.1.tgz(r-4.3-any)
micropan_2.2.1.tar.gz(r-4.5-noble)micropan_2.2.1.tar.gz(r-4.4-noble)
micropan_2.2.1.tgz(r-4.4-emscripten)micropan_2.2.1.tgz(r-4.3-emscripten)
micropan.pdf |micropan.html✨
micropan/json (API)

# Install 'micropan' in R:
install.packages('micropan', repos = c('https://larssnip.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/larssnip/micropan/issues

Datasets:

On CRAN:

6.15 score 21 stars 67 scripts 274 downloads 19 mentions 27 exports 25 dependencies

Last updated 3 years agofrom:4bd8f5028a. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 02 2025
R-4.5-winNOTEFeb 02 2025
R-4.5-macNOTEFeb 02 2025
R-4.5-linuxNOTEFeb 02 2025
R-4.4-winNOTEFeb 02 2025
R-4.4-macNOTEFeb 02 2025
R-4.3-winNOTEFeb 02 2025
R-4.3-macNOTEFeb 02 2025

Exports:bClustbDistbinomixEstimateblastpAllAllchaodClustdistJaccarddistManhattanentrezDownloadextractPanGenesfluiditygeneFamilies2fastageneWeightsgetAccessionsheapshmmerCleanOverlaphmmerScanisOrthologpanMatrixpanPcapanPreprarefactionreadBlastPairreadBlastSelfreadHmmerxzcompressxzuncompress

Dependencies:clicpp11data.tabledplyrfansigenericsglueigraphlatticelifecyclemagrittrMatrixmicroseqpillarpkgconfigR6Rcpprlangstringistringrtibbletidyselectutf8vctrswithr

The micropan package vignette

Rendered fromvignette.Rnwusingutils::Sweaveon Feb 02 2025.

Last update: 2020-11-09
Started: 2017-08-10