Package: micropan 2.2.1

micropan: Microbial Pan-Genome Analysis

A collection of functions for computations and visualizations of microbial pan-genomes.

Authors:Lars Snipen and Kristian Hovde Liland

micropan_2.2.1.tar.gz
micropan_2.2.1.zip(r-4.5)micropan_2.2.1.zip(r-4.4)micropan_2.2.1.zip(r-4.3)
micropan_2.2.1.tgz(r-4.4-any)micropan_2.2.1.tgz(r-4.3-any)
micropan_2.2.1.tar.gz(r-4.5-noble)micropan_2.2.1.tar.gz(r-4.4-noble)
micropan_2.2.1.tgz(r-4.4-emscripten)micropan_2.2.1.tgz(r-4.3-emscripten)
micropan.pdf |micropan.html✨
micropan/json (API)

Peer review:

Bug tracker:https://github.com/larssnip/micropan/issues

On CRAN:

27 exports 21 stars 3.71 score 25 dependencies 19 mentions 62 scripts 235 downloads

Last updated 2 years agofrom:4bd8f5028a. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:bClustbDistbinomixEstimateblastpAllAllchaodClustdistJaccarddistManhattanentrezDownloadextractPanGenesfluiditygeneFamilies2fastageneWeightsgetAccessionsheapshmmerCleanOverlaphmmerScanisOrthologpanMatrixpanPcapanPreprarefactionreadBlastPairreadBlastSelfreadHmmerxzcompressxzuncompress

Dependencies:clicpp11data.tabledplyrfansigenericsglueigraphlatticelifecyclemagrittrMatrixmicroseqpillarpkgconfigR6Rcpprlangstringistringrtibbletidyselectutf8vctrswithr