Package: microcontax 1.2

microcontax: The ConTax Data Package

The consensus taxonomy for prokaryotes is a set of data-sets for best possible taxonomic classification based on 16S rRNA sequence data.

Authors:Hilde Vinje, Kristian Hovde Liland, Lars Snipen.

microcontax_1.2.tar.gz
microcontax_1.2.zip(r-4.5)microcontax_1.2.zip(r-4.4)microcontax_1.2.zip(r-4.3)
microcontax_1.2.tgz(r-4.4-any)microcontax_1.2.tgz(r-4.3-any)
microcontax_1.2.tar.gz(r-4.5-noble)microcontax_1.2.tar.gz(r-4.4-noble)
microcontax_1.2.tgz(r-4.4-emscripten)microcontax_1.2.tgz(r-4.3-emscripten)
microcontax.pdf |microcontax.html✨
microcontax/json (API)

# Install 'microcontax' in R:
install.packages('microcontax', repos = c('https://larssnip.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/larssnip/microcontax/issues

Datasets:

On CRAN:

3.48 score 1 stars 1 packages 10 scripts 182 downloads 1 mentions 11 exports 21 dependencies

Last updated 4 years agofrom:bb6fc9ac65. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winNOTENov 08 2024
R-4.5-linuxNOTENov 08 2024
R-4.4-winOKNov 08 2024
R-4.4-macOKNov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:fullTaxonomygenusLookupgetClassgetDomaingetFamilygetGenusgetOrdergetPhylumgetTaggetTaxonomymicrocontax

Dependencies:clidata.tabledplyrfansigenericsgluelifecyclemagrittrmicroseqpillarpkgconfigR6Rcpprlangstringistringrtibbletidyselectutf8vctrswithr

The microcontax package vignette

Rendered fromvignette.Rnwusingutils::Sweaveon Nov 08 2024.

Last update: 2020-08-11
Started: 2017-08-10

Readme and manuals

Help Manual

Help pageTopics
The ConTax data packagemicrocontax-package microcontax
The ConTax data setcontax.trim
The full taxonomy of a genusfullTaxonomy
Taxonomy lookupgenusLookup
Extractor functions for ConTax datagetClass getDomain getFamily getGenus getOrder getPhylum getTag getTaxonomy
The ConTax medoidsmedoids
Taxonomy look-up tabletaxonomy.table