Package: microcontax 1.2
microcontax: The ConTax Data Package
The consensus taxonomy for prokaryotes is a set of data-sets for best possible taxonomic classification based on 16S rRNA sequence data.
Authors:
microcontax_1.2.tar.gz
microcontax_1.2.zip(r-4.5)microcontax_1.2.zip(r-4.4)microcontax_1.2.zip(r-4.3)
microcontax_1.2.tgz(r-4.4-any)microcontax_1.2.tgz(r-4.3-any)
microcontax_1.2.tar.gz(r-4.5-noble)microcontax_1.2.tar.gz(r-4.4-noble)
microcontax_1.2.tgz(r-4.4-emscripten)microcontax_1.2.tgz(r-4.3-emscripten)
microcontax.pdf |microcontax.html✨
microcontax/json (API)
| # Install 'microcontax' in R: |
| install.packages('microcontax', repos = c('https://larssnip.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/larssnip/microcontax/issues
- contax.trim - The ConTax data set
- medoids - The ConTax medoids
- taxonomy.table - Taxonomy look-up table
Last updated 4 years agofrom:bb6fc9ac65. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 09 2024 |
| R-4.5-win | NOTE | Sep 09 2024 |
| R-4.5-linux | NOTE | Sep 09 2024 |
| R-4.4-win | OK | Sep 09 2024 |
| R-4.4-mac | OK | Sep 09 2024 |
| R-4.3-win | OK | Sep 09 2024 |
| R-4.3-mac | OK | Sep 09 2024 |
Exports:fullTaxonomygenusLookupgetClassgetDomaingetFamilygetGenusgetOrdergetPhylumgetTaggetTaxonomymicrocontax
Dependencies:clidata.tabledplyrfansigenericsgluelifecyclemagrittrmicroseqpillarpkgconfigR6Rcpprlangstringistringrtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The ConTax data package | microcontax-package microcontax |
| The ConTax data set | contax.trim |
| The full taxonomy of a genus | fullTaxonomy |
| Taxonomy lookup | genusLookup |
| Extractor functions for ConTax data | getClass getDomain getFamily getGenus getOrder getPhylum getTag getTaxonomy |
| The ConTax medoids | medoids |
| Taxonomy look-up table | taxonomy.table |
